Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs376737870 | chr1:213087335 | T/A | 6.15E-5 | 407 | 15.98 | 20.78 | 5.03 | KM Plot |
| HNSC | rs3835312 | chr22:24468184 | G/GC | 2.76E-5 | 412 | 10.02 | 14.47 | 16.4 | KM Plot |
| HNSC | rs3843398 | chr3:63058736 | T/G | 1.95E-5 | 408 | 14.87 | 19.23 | 17.37 | KM Plot |
| HNSC | rs3848004 | chr13:27980707 | C/G | 5.12E-5 | 412 | 13.45 | 11.85 | 16.92 | KM Plot |
| HNSC | rs41282762 | chr20:44424164 | G/A | 5.44E-7 | 408 | 16.35 | 14.67 | 9.13 | KM Plot |
| HNSC | rs41282768 | chr20:44430740 | C/T | 5.44E-7 | 408 | 16.35 | 14.67 | 9.13 | KM Plot |
| HNSC | rs4307700 | chr11:12391166 | C/T | 3.78E-6 | 405 | 5.77 | 17.6 | 16.35 | KM Plot |
| HNSC | rs4458269 | chr20:44442561 | T/C | 4.43E-7 | 408 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs45486998 | chr20:44441658 | A/G | 4.79E-7 | 410 | 16.35 | 15.3 | 9.13 | KM Plot |
| HNSC | rs45549239 | chr20:44418482 | C/T | 6.51E-7 | 411 | 16.35 | 14.98 | 9.13 | KM Plot |
| HNSC | rs45577433 | chr1:38082381 | G/C | 5.67E-5 | 411 | 16.33 | 16.23 | 4.73 | KM Plot |
| HNSC | rs4570736 | chr13:48334097 | C/T | 0 | 412 | 16.47 | 16.17 | 0.07 | KM Plot |
| HNSC | rs4757404 | chr11:12397294 | C/G | 7.04E-5 | 410 | 7.42 | 17.62 | 16.4 | KM Plot |
| HNSC | rs475967 | chr11:65206917 | A/G | 1.28E-5 | 406 | 17.37 | 14.67 | 6.3 | KM Plot |
| HNSC | rs4820581 | chr22:24480503 | G/A | 2.76E-5 | 412 | 10.02 | 14.47 | 16.4 | KM Plot |